Search This Blog

ADITYA JAIN

ADITYA JAIN I AM A BIOINFORMATIC STUDENT OF INDORE.

E-BOOKS OF BIOINFORMATICS

Get link
Facebook
X
Pinterest
Email
Other Apps

- November 02, 2012

E-BOOKS :-

PERL
BIOPERL
MOLECULAR GENETICS
BIOINFORMATIC SEQUENCE AND GENOME ANALYSIS
PROTEIN STRUCTURE
KUBY-IMMUNOLOGY
PROTEIN STRUCTURE AND FUNCTION
ABC OF CLINICAL GENETICS
BIOINFORMATIC
PROTEOMICS IN PRACTISE
PROTEIN STRUCTURE PREDICTION
ESSENTIAL BIOINFORMATIC
Lesk A.M. Introduction to bioinformatics (Oxford, 2002)(255s).

intelligent-bioinformatics-the-application-of-artificial-intelligence.pdf
drug_design_based_on_bioinformatics_too.pdf
Developing Bioinformatics Computer Skills.pdf
Cold Spring Harbor Laboratory Press - Bioinformatics. Sequence and Genome Analysis.pdf
Bioinformatics for Dummies - 2007.pdf
Bioinformatics - Computational Molecular Biology.pdf
Bioinformatics - Computational Genetics - Wiley1.pdf
Baxevanis A.D., Ouelette B.F.F. Bioinformatics.. a practical guide to the analysis of genes and p.pdf

Get link
Facebook
X
Pinterest
Email
Other Apps

Comments

Multiple sequence alignment

- July 08, 2015

Name Description Sequence Type* Alignment Type** Link Author Year License ABA A-Bruijn alignment Protein Global download B.Raphael et al. 2004 Proprietary, without charge for educational, research and non profit. ALE manual alignment ; some software assistance Nucleotides Local download J. Blandy and K. Fogel 1994 (latest version 2007) GPL2 AMAP Sequence annealing Both Global server A. Schwartz and L. Pachter 2006 anon. fast, optimal alignment of three sequences using linear gap costs Nucleotides Global paper software D. Powell, L. Allison and T. I. Dix 2000 BAli-Phy Tree+Multi alignment ; Probabilistic/Bayesian ; Joint Estimation Both Global WWW+download BD Redelings and MA Suchard 2005 (latest version 2015) GPL Base-By-Base Java-based multiple sequence alignment editor with integrated analysis tools Both Local or Global download R. Brodie et al. 2004 Free, requires registration. CHAOS/DIALIGN Iterative alignment Both Local (preferred) ...

Pairwise alignment

- July 08, 2015

Name Description Sequence Type* Alignment Type** Link Author Year ACANA fast heuristic anchor based pairwise alignment Both Both download Huang, Umbach, Li 2005 AlignMe Alignments for membrane protein sequences Protein Both download , server M. Stamm, K. Khafizov, R. Staritzbichler, L.R. Forrest 2013 Bioconductor Biostrings::pairwiseAlignment Dynamic programming Both Both + Ends-free site P. Aboyoun 2008 BioPerl dpAlign Dynamic programming Both Both + Ends-free site Y. M. Chan 2003 BLASTZ,LASTZ Seeded pattern-matching Nucleotide Local download , download Schwartz et al. [9] [10] 2004,2009 DNADot Web-based dot-plot tool Nucleotide Global server R. Bowen 1998 DOTLET Java-based dot-plot tool Both Global applet M. Pagni and T. Junier 1998 FEAST Posterior based local extension with descriptive evolution model Nucleotide Local site A. K. Hudek and D. G. Brown 2010 G-PAS GPU-based dynamic programming with backtracking Both Local, SemiGlobal, Global site+download W. Fr...

5 Projects completed by Aditya Jain

- March 17, 2018

1. An integrated Repository of Computational Prediction of Deleterious SNPs Involved in Pathway of Bacterial Invasion of Epithelial Cells (BIoEC) in Homo sapiens Oct 2014 – Oct 2014 Project description polyBIoECP is a directory of all the synonymous (sSNP) and non synonymous (nsSNP) polymorphisms collected using SCAN database which are associated with various genes involved in bacterial invasion of epithelial cells pathway. Â It is an effort to evaluate the phenotypic effect of all known nsSNPs of the genes involved in BIoEC pathway and to enable researchers an easy access. To further validate, this database was developed with an updated list of all validated nsSNPs from dbSNP (NCBI) and their effect on the structure and functions of the proteins along with their genomic elements such as miRNA, CNV and CpG islands. BIoECP also has a comparative analysis of native and mutant protein (using MODELLER) of the respective polymorphism validated using Ramachandran Plot. Other...