Name Description Sequence Type* Alignment Type** Link Author Year ACANA fast heuristic anchor based pairwise alignment Both Both download Huang, Umbach, Li 2005 AlignMe Alignments for membrane protein sequences Protein Both download , server M. Stamm, K. Khafizov, R. Staritzbichler, L.R. Forrest 2013 Bioconductor Biostrings::pairwiseAlignment Dynamic programming Both Both + Ends-free site P. Aboyoun 2008 BioPerl dpAlign Dynamic programming Both Both + Ends-free site Y. M. Chan 2003 BLASTZ,LASTZ Seeded pattern-matching Nucleotide Local download , download Schwartz et al. [9] [10] 2004,2009 DNADot Web-based dot-plot tool Nucleotide Global server R. Bowen 1998 DOTLET Java-based dot-plot tool Both Global applet M. Pagni and T. Junier 1998 FEAST Posterior based local extension with descriptive evolution model Nucleotide Local site A. K. Hudek and D. G. Brown 2010 G-PAS GPU-based dynamic programming with backtracking Both Local, SemiGlobal, Global site+download W. Fr...
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