-
Databases:-
  • Nucleotide database
         1. DDBJ (DNA Data Bank of Japan)
           2. EMBL Nucleotide DB(European Molecular Biology Laboratory)
           3. GenBank  (National Center for Biotechnology Information)
  • Protein sequence databases  
           1. UniProt ( Universal Protein Resource (UniProt Consortium: EBI, Expasy, PIR)
           2. PIR  Protein Information Resource (Georgetown University Medical Center (GUMC)
           3. Swiss-Prot( Protein Knowledgebase (Swiss Institute of Bioinformatics)
           4. PEDANT Protein Extraction, Description and ANalysis Tool
                               (Forschungszentrum f. Umwelt        &         Gesundheit)
           5. PROSITE Database of Protein Families and Domains
           6. DIP Database of Interacting Proteins (Univ. of California)
           7. Pfam Protein families database of alignments and HMMs (Sanger Institute)

  • Protein structure Databases
             1. Protein Data Bank (PDB) (Research Collaboratory for Structural Bioinformatics
                                              (RCSB)
              2. CATH Protein Structure Classification
              3. SCOP Structural Classification of Proteins

Genome Database
1) TIGR Trst (Trieste), Istra (Istria), Gorica (Gorizia) and Reka
2) SANGER institute
3) GOLD Genome online database
4) PLASMODB Plasmodium genome database
5) CAMERA Resource for microbial genomics and metagenomics
6) Corn, the Maize Genetics and Genomics Database
7) Ensembl provides automatic annotation databases for human, mouse, other
vertebrate and eukaryote genomes.
8) ERIC (Enteropathogen Resource Integration Center) Curated database containing
annotated genome data for five enteropathogens - Escherichia coli, Shigella,
Salmonella, Yersinia enterocolitica, and Y. pestis.
9) Flybase, genome of the model organism Drosophila melanogaster
10)MGI Mouse Genome (Jackson Lab.)
11)JGI Genomes of the DOE-Joint Genome Institute provides databases of many
eukaryote and microbial genomes.
  • OTHERS
  1. NCBI
  2. PDB
  3. MSD
  4. CATH
  5. trEMBL
  6. SCOP
  7. PRESAGE
  8. MODBASE
  9. GENE CENSUS
  10. GENE BANK
  11. PSI



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