Databases:- Nucleotide database 1. DDBJ (DNA Data Bank of Japan) 2. EMBL Nucleotide DB (European Molecular Biology Laboratory) 3. GenBank (National Center for Biotechnology Information) Protein sequence databases 1. UniProt ( Universal Protein Resource (UniProt Consortium: EBI, Expasy, PIR) 2. PIR Protein Information Resource (Georgetown University Medical Center (GUMC) 3. Swiss-Prot ( Protein Knowledgebase (Swiss Institute of Bioinformatics) 4. PEDANT Protein Extraction, Description and ANalysis Tool (Forschungszentrum f. Umwelt & Gesundheit) 5. PROSITE Database of Protein Families and Domains 6. DIP Database of Interacting Proteins (Univ. of California) 7. Pfam Protein families database of alignments and HMMs (Sanger Institute) Protein structure Databases 1. Protein Data Bank (PDB) (Re
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TOOLS FOR HOMOLOGY MODELING (COMPARATIVE MODELING) Program Website address Program description Geno3d http://pbil.ibcp.fr/ Automatic modeling of protein three-dimensional structure Swiss Model http://www.expasy.org/swissmod/SWISS-MODEL.html An automated knowledge-based protein modeling server; first approach and optimise CPHmodels Http://www.cbs.dtu.dk/services/CPHmodels/ Automated neural-network based protein modeling server Modeller http://salilab.org/ A program for automated protein Homology Modeling Amber http://amber.scripps.edu/ Similar package as CHARMm. Developed by Kollaman's group at UCSF Homology http://www.accelrys.com/ Automatic Homology Modeling module. The software suite also has Modeller, SeqFold modules, Quanta Wloop http://psb00.snv.jussieu.fr/wloop/ The Loop Homology Modeling Server What-If
MOTIF SEARCH AND DOMAIN SEARCH TOOLS:-
3DEE CDTREE GLOBPLOT2 PROSITE MEMERIS RNAMST CMFINDER COMRNA 3DINSIGHT
E-BOOKS :- PERL BIOPERL MOLECULAR GENETICS BIOINFORMATIC SEQUENCE AND GENOME ANALYSIS PROTEIN STRUCTURE KUBY-IMMUNOLOGY PROTEIN STRUCTURE AND FUNCTION ABC OF CLINICAL GENETICS BIOINFORMATIC PROTEOMICS IN PRACTISE PROTEIN STRUCTURE PREDICTION ESSENTIAL BIOINFORMATIC Lesk A.M. Introduction to bioinformatics (Oxford, 2002)(255s). intelligent-bioinformatics-the-application-of-artificial-intelligence.pdf drug_design_based_on_bioinformatics_too.pdf Developing Bioinformatics Computer Skills.pdf Cold Spring Harbor Laboratory Press - Bioinformatics. Sequence and Genome Analysis.pdf Bioinformatics for Dummies - 2007.pdf Bioinformatics - Computational Molecular Biology.pdf Bioinformatics - Computational Genetics - Wiley1.pdf Baxevanis A.D., Ouelette B.F.F. Bioinformatics.. a practical guide to the analysis of genes and p.pdf