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TOOLS FOR HOMOLOGY MODELING (COMPARATIVE MODELING)
Program Website address Program description
Geno3d http://pbil.ibcp.fr/ Automatic modeling of protein three-dimensional structure
Swiss Model http://www.expasy.org/swissmod/SWISS-MODEL.html An automated knowledge-based protein modeling server; first approach and optimise
CPHmodels Http://www.cbs.dtu.dk/services/CPHmodels/ Automated neural-network based protein modeling server
Modeller http://salilab.org/ A program for automated protein Homology Modeling
Amber http://amber.scripps.edu/ Similar package as CHARMm. Developed by Kollaman's group at UCSF
Homology http://www.accelrys.com/ Automatic Homology Modeling module. The software suite also has Modeller, SeqFold modules, Quanta
Wloop http://psb00.snv.jussieu.fr/wloop/ The Loop Homology Modeling Server
What-If Server http://www.cmbi.kun.nl/gv/servers/WIWWWI/ V.Friend's What-IF Homology Modeling Server
SPORulate http://cgat.ukm.my/spores/Predictory/sporulate/s_predict_metaserver.html Send jobs by 'SPORulation' (meta server)  to selected servers available above using the respective server's default values.
SDSC1 http://cl.sdsc.edu/hm.html SDSC Protein Structure Homology Modeling Server

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