Databases:- Nucleotide database 1. DDBJ (DNA Data Bank of Japan) 2. EMBL Nucleotide DB (European Molecular Biology Laboratory) 3. GenBank (National Center for Biotechnology Information) Protein sequence databases 1. UniProt ( Universal Protein Resource (UniProt Consortium: EBI, Expasy, PIR) 2. PIR Protein Information Resource (Georgetown University Medical Center (GUMC) 3. Swiss-Prot ( Protein Knowledgebase (Swiss Institute of Bioinformatics) 4. PEDANT Protein Extraction, Description and ANalysis Tool ...
Popular posts from this blog
Multiple sequence alignment
Name Description Sequence Type* Alignment Type** Link Author Year License ABA A-Bruijn alignment Protein Global download B.Raphael et al. 2004 Proprietary, without charge for educational, research and non profit. ALE manual alignment ; some software assistance Nucleotides Local download J. Blandy and K. Fogel 1994 (latest version 2007) GPL2 AMAP Sequence annealing Both Global server A. Schwartz and L. Pachter 2006 anon. fast, optimal alignment of three sequences using linear gap costs Nucleotides Global paper software D. Powell, L. Allison and T. I. Dix 2000 BAli-Phy Tree+Multi alignment ; Probabilistic/Bayesian ; Joint Estimation Both Global WWW+download BD Redelings and MA Suchard 2005 (latest version 2015) GPL Base-By-Base Java-based multiple sequence alignment editor with integrated analysis tools Both Local or Global download R. Brodie et al. 2004 Free, requires registration. CHAOS/DIALIGN Iterative alignment Both Local (preferred) ...
Comments
Post a Comment